GgaEX1010593 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38239304-38245378:-
Coord C1 exon
chr7:38245223-38245378
Coord A exon
chr7:38240585-38240746
Coord C2 exon
chr7:38239304-38239497
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGCTCTGTGATACAGAAT
3' ss Score
7.44
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATATGGAGTCTGGAGAGCGGTTAACGTCGTCATCAGTCTCTTCAACTGCAGCTGCTTCATCTCCAGTGTCTTCTACACCTTCTGTAGCTTCTGCGGTTTCCAAGAGTGGCCTTACCACTGGAGCTGCGTCGTTGAGTTCCACAATCAACACGGGTG
Seq A exon
AATGGTGGCGAACAGCGGACTCTCACTCTCGTTCTGGGGCAGCTTTTTTCCCACCACTCTTGGGCATCTCACCGCTCTTTGCACCTCCTGCCCAAAACCATGATTCTACTCCATTCCACCCAAGAACTACAGGAAAAAATAATCGTGGCAGTTTAGAAAAAG
Seq C2 exon
GTATAAATGGATCACTGAATGGGAACAGTACCACTGCAGCATCTGCTATCAGCACATCTGTACTGTCCACTAGTATTGCAACATCCGCAGGGCAAGTGAAAGTGGTAACCTCAGGAGCAGGAGGCCGCAAATACAACCAGGAGCAAAACAAAGTTCAGCTTTTGGACACCAGAGCTGACAAAATTAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'3-9,'3-6,4-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.669 A=0.640 C2=0.959
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0334410=Daxx=PU(7.3=36.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGAGAGCGGTTAACGT
R:
CCCTGCGGATGTTGCAATACT
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]