HsaEX0007742 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160303293-160310312:-
Coord C1 exon
chr2:160310124-160310312
Coord A exon
chr2:160304753-160304920
Coord C2 exon
chr2:160303293-160303486
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTGTTTGGTTTTGAGGTG
3' ss Score
2.35
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GACATTTATTCAGAACAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAACTAGCATCTTTTCCAG
Seq A exon
GTGCAGAATGGTGGCGAACAACTGATGCTCATACTCGTACAGGAGCAACCTTCTTTCCACCATTACTGGGAATTCCACCACTATTTGCTCCCCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCGGGAAAAAGTAATCGAAATGGTCCCGAAAAAG
Seq C2 exon
GTGTAAATGGGTCAATAAATGGAAGTAATACATCATCTGTAATTGGTATCAACACATCTGTACTATCCACTACTGCTTCAAGTTCCATGGGACAAACTAAAAGTACAAGCTCAGGTGGAGGAAATCGAAAATGTAATCAGGAACAAAGCAAAAACCAGCCTTTGGATGCTAGAGTTGACAAAATCAAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_MULTIEX1-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=0.679 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCCAGTCTTTGGTCTA
R:
TCGATTTCCTCCACCTGAGCT
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)