MmuEX6101317 @ mm9
Exon Skipping
Gene
ENSMUSG00000036093 | Arl5a
Description
ADP-ribosylation factor-like 5A [Source:MGI Symbol;Acc:MGI:1922673]
Coordinates
chr2:52260426-52271731:-
Coord C1 exon
chr2:52271584-52271731
Coord A exon
chr2:52267582-52267665
Coord C2 exon
chr2:52260426-52260577
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGGTAATTATTTTAGTTT
3' ss Score
6.38
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTCCATGAATGAAGTCGTACACACATCTCCTACAATAGGAAGCAATGTGGAAGAGATTGTGGTTAATAATACCCGTTTCCTGATGTGGGATATTGGTGGCCAAGAATCACTTCGTCCTTCCTGGAACACGTACTATACTAACACAGAG
Seq A exon
TTTGTAATAGTTGTTGTGGACAGCACAGACAGAGAAAGAATTTCGGTAACTAGAGAAGAGCTCTACAAGATGCTAGCCCACGAG
Seq C2 exon
GACCTAAGAAAAGCTGGGTTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGACAGTAGCAGAAATCTCCCAGTTTTTGAAGCTTACTTCTATAAAAGACCACCAGTGGCATATTCAAGCATGTTGCGCTCTTACTGGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036093-'3-7,'3-3,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(28.5=100)
A:
PF0002516=Arf=FE(15.7=100)
C2:
PF0002516=Arf=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCCAAGAATCACTTCGT
R:
TGCTTGAATATGCCACTGGTG
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: