GgaEX0018910 @ galGal3
Exon Skipping
Gene
ENSGALG00000012509 | F1NCH5_CHICK
Description
NA
Coordinates
chr7:36936473-36941308:-
Coord C1 exon
chr7:36941197-36941308
Coord A exon
chr7:36939979-36940062
Coord C2 exon
chr7:36936473-36936624
Length
84 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTGGCTTTTTGAAGTTT
3' ss Score
5.11
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGGCAGCAATGTGGAAGAGATCGTGGTTAACAACACACGCTTTCTGATGTGGGATATTGGAGGGCAGGAGTCCCTGCGGTCTTCGTGGAACACCTACTACACCAACACTGAG
Seq A exon
TTTGTAATAGTTGTTGTGGACAGCACAGACAGAGAGAGAATTTCGGTGACTAAAGAAGAACTGTATAAGATGTTAGCACATGAG
Seq C2 exon
GACTTGAAGAAAGCAGGTTTGCTGATCTTTGCTAACAAGCAAGATGTTAAAGAGTGTATGACGGTGGCTGAAATCTCTCAGTTTCTGAAGCTGACTTCAATTAAGGATCACCAGTGGCACATTCAGGCGTGCTGTGCTCTAACCGGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509-'2-10,'2-7,3-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(21.9=100)
A:
PF0002516=Arf=FE(16.0=100)
C2:
PF0002516=Arf=FE(29.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTGGAGGGCAGGAGTCCC
R:
GAATGTGCCACTGGTGATCCT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]