DreEX0014767 @ danRer10
Exon Skipping
Gene
ENSDARG00000018627 | arl5a
Description
ADP-ribosylation factor-like 5A [Source:ZFIN;Acc:ZDB-GENE-040718-28]
Coordinates
chr9:23095267-23095808:-
Coord C1 exon
chr9:23095661-23095808
Coord A exon
chr9:23095508-23095591
Coord C2 exon
chr9:23095267-23095418
Length
84 bp
Sequences
Splice sites
3' ss Seq
CATGTGTCTCTTGTGTGCAGTTT
3' ss Score
8.62
5' ss Seq
GAGGCCAGT
5' ss Score
-0.05
Exon sequences
Seq C1 exon
CTCTATGAATGAGGTGGTCCACACTTCACCCACCATAGGCAGCAATGTGGAAGAGATTGTGGTGAACAATACACACTTCCTCATGTGGGACATTGGAGGACAGGAGTCGCTGCGCTCCTCATGGAACACTTACTACACCAACACAGAG
Seq A exon
TTTGTGATCGTGGTGGTGGACAGCACTGACCGAGAGAGGATCTCCGTGACCAGAGAGGAGCTCTACAGGATGTTAGCTCACGAG
Seq C2 exon
GATCTGAAAAAAGCTGGTTTGTTGATATTCGCTAACAAGCAAGACGTGAAGGGCTGTTTGACTGTAGCTGAGATTTCTCAGAGTCTTCAGCTGACTTCTGTCAAAGACCATCAGTGGCACATTCAGGCATGCTGTGCCCTCACCGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018627-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(28.0=100)
A:
PF0002516=Arf=FE(15.4=100)
C2:
PF0002516=Arf=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATAGGCAGCAATGTGGA
R:
CAGTCAAACAGCCCTTCACGT
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]