RnoEX6016865 @ rn6
Exon Skipping
Gene
ENSRNOG00000006839 | Arl5a
Description
ADP-ribosylation factor like GTPase 5A [Source:RGD Symbol;Acc:621327]
Coordinates
chr3:37929437-37938697:-
Coord C1 exon
chr3:37938550-37938697
Coord A exon
chr3:37936871-37936954
Coord C2 exon
chr3:37929437-37929588
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTAATTATTTTAGTTT
3' ss Score
8.16
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTCCATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGCAATGTGGAAGAGATTGTGGTTAATAATACACGTTTCCTGATGTGGGATATTGGTGGCCAAGAATCCCTTCGTTCTTCCTGGAACACTTATTATACTAACACAGAG
Seq A exon
TTTGTAATAGTTGTGGTGGACAGCACAGACAGAGAAAGAATTTCTGTAACTAGAGAAGAGCTCTACAAAATGCTAGCCCACGAG
Seq C2 exon
GACCTAAGGAAAGCTGGGTTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGACAGTAGCAGAAATCTCCCAGTTTTTGAAGCTCACTTCTATAAAAGACCACCAATGGCATATCCAAGCATGCTGTGCTCTCACTGGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006839-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(28.5=100)
A:
PF0002516=Arf=FE(15.7=100)
C2:
PF0002516=Arf=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCGTTCTTCCTGGAACA
R:
CACAGCATGCTTGGATATGCC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]