MmuEX0027084 @ mm9
Exon Skipping
Gene
ENSMUSG00000007476 | Lrrc8a
Description
leucine rich repeat containing 8A [Source:MGI Symbol;Acc:MGI:2652847]
Coordinates
chr2:30094593-30096197:+
Coord C1 exon
chr2:30094593-30094693
Coord A exon
chr2:30095529-30095620
Coord C2 exon
chr2:30096089-30096197
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTAACTCCCTCATAGCTG
3' ss Score
6.31
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
CAGAGGCTCAGGGGTGGTGCCAGTGGGCTAGGCCGTTCATCCTGCTGTTTCCTTGATGAAGGTCGGGCTCTCCTCCAGCTGTCATGGGCAGGCAAGGGCAG
Seq A exon
CTGGGCCACACTCCCATCTCCGGCTATTGTTGCTGTCTTCCAAGTCTGGAGCGGTGCCCACACTTCTCTCTCACACAGCCACCTTATCTTTG
Seq C2 exon
GGCAGCAGCAGCGTCCATGGAGCAAAAGGAATGTCAGGGCCCTGTGCATCCAGACAGGGACCAGCCTCAGCACCAACAGCCAACACAAAGATAGCAGAGTCATCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007476-'4-1,'4-0,5-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCATCCTGCTGTTTCCT
R:
TCTGCTATCTTTGTGTTGGCTGT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: