MmuEX0050748 @ mm9
Exon Skipping
Gene
ENSMUSG00000069020 | Urm1
Description
ubiquitin related modifier 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915455]
Coordinates
chr2:29696922-29698289:+
Coord C1 exon
chr2:29696922-29697003
Coord A exon
chr2:29697985-29698066
Coord C2 exon
chr2:29698241-29698289
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTGTACCCTCAGCAGACC
3' ss Score
5.22
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGGATATACGGAACCTCCTTGTCTGGATCAAGAAGAATTTGCTAAAAGAGCGACCAGAGCTGTTCATCCAGGGAGACAGTGT
Seq A exon
ACCTTGTCATTGGCTCTGTCTTCACATGAAGGAAGCTGATGCTTGGAGAGCTACAATGCCTTCCCTGAAGTCTGGGCAGTAG
Seq C2 exon
GCGGCCAGGAATCCTGGTGCTGATTAATGATGCCGACTGGGAACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069020-'4-10,'4-8,7-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.1=100)
A:
PF091386=Urm1=PD(20.5=53.6)
C2:
PF091386=Urm1=FE(16.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATACGGAACCTCCTTGT
R:
CAGTTCCCAGTCGGCATCATT
Band lengths:
128-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types