MmuEX0050748 @ mm10
Exon Skipping
Gene
ENSMUSG00000069020 | Urm1
Description
ubiquitin related modifier 1 [Source:MGI Symbol;Acc:MGI:1915455]
Coordinates
chr2:29841402-29842769:+
Coord C1 exon
chr2:29841402-29841483
Coord A exon
chr2:29842462-29842546
Coord C2 exon
chr2:29842721-29842769
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCACTTTGTTGTACCCTCAGCAG
3' ss Score
5.27
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGGATATACGGAACCTCCTTGTCTGGATCAAGAAGAATTTGCTAAAAGAGCGACCAGAGCTGTTCATCCAGGGAGACAGTGT
Seq A exon
CAGACCTTGTCATTGGCTCTGTCTTCACATGAAGGAAGCTGATGCTTGGAGAGCTACAATGCCTTCCCTGAAGTCTGGGCAGTAG
Seq C2 exon
GCGGCCAGGAATCCTGGTGCTGATTAATGATGCCGACTGGGAACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069020_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.1=100)
A:
NA
C2:
PF091386=Urm1=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATACGGAACCTCCTTGT
R:
CAGTTCCCAGTCGGCATCATT
Band lengths:
128-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types