MmuEX6100106 @ mm10
Exon Skipping
Gene
ENSMUSG00000069020 | Urm1
Description
ubiquitin related modifier 1 [Source:MGI Symbol;Acc:MGI:1915455]
Coordinates
chr2:29841402-29845002:+
Coord C1 exon
chr2:29841402-29841483
Coord A exon
chr2:29842721-29842769
Coord C2 exon
chr2:29843103-29845002
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACTACCCTCTTTCCCACAGGCG
3' ss Score
10.3
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGGATATACGGAACCTCCTTGTCTGGATCAAGAAGAATTTGCTAAAAGAGCGACCAGAGCTGTTCATCCAGGGAGACAGTGT
Seq A exon
GCGGCCAGGAATCCTGGTGCTGATTAATGATGCCGACTGGGAACTGCTG
Seq C2 exon
GGGGAGCTGGACTACCAGCTGCAGGACCAAGACAGCATCCTCTTCATCTCCACACTGCACGGCGGCTGAGGCCTCCCCAGTGGGCCCAAGCACCTTTGCAGGGGAACACAGGACAACCACAGCACTCCTCGATCTGCTTCCAGGTCCTCAGTCCCCCTTGGCTGCCTCCTTCCCTGCTGTACCCCTGAGCTTCCTCTAGGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTTTCTGGGCAAGGCACGTGAGCAGGGAGAGCGAAGAGAGAGAGCAGCCGCCTGAGTCCAGCACTCCTCCCAGCAGCTGAGGTGGGGGAGGGTGTTCCTGTGCTGTGTCAGGAGTAGAGGGGGCTCTGTGCCCAGGTGACCCAGCTGCTTGCCACTCATGTGTCTTGGTGTATCTAAGCACTGAGTGGTTGCCTGGAAGGCACTCCAGTTCCTGAGACATCTTCATGGGGAAGATAGATGGGCTGGAGTAACTGATGAGAAACTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069020_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.1=100)
A:
PF091386=Urm1=FE(16.7=100)
C2:
PF091386=Urm1=PD(21.9=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTCATCCAGGGAGACA
R:
CTGTGGTTGTCCTGTGTTCCC
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types