GgaEX1062374 @ galGal3
Exon Skipping
Gene
ENSGALG00000004971 | URM1_CHICK
Description
NA
Coordinates
chr17:5578675-5582613:-
Coord C1 exon
chr17:5582532-5582613
Coord A exon
chr17:5581456-5581504
Coord C2 exon
chr17:5578675-5580774
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATTATTTCTGTGTTCTGCAGGAG
3' ss Score
9.73
5' ss Seq
ATGGTCTGT
5' ss Score
2.86
Exon sequences
Seq C1 exon
GGGATATCAGAAACCTGCTAAAGTGGATCAAACAGAATCTGCTGAAAGAGCGGCCGGAATTATTTATGCAAGGGGAATCTGT
Seq A exon
GAGGCCAGGAATTTTGGTGCTCATCAACGACGCAGACTGGGAGCTAATG
Seq C2 exon
GGTGAGCTGGATTATAAACTCCAGGACCAGGATAATGTGCTTTTCATCTCGACGTTACATGGTGGGTGAACTCCTGGAAAAAGACAAGGACGTGAATCCAAACCCTTGGGCAAACAAACACCTAAACCCACCCAAACCTCTCTCGAACTGTCTGTGCCTGACCCCTGCATCATCCCACCACCTCCACTTGTTAACAGACATCCAAATAAAGCCCCGTCAGCACACAGCCTGCTGCGTACTGCTACGGCATCCATCTTTTGGTCCTCATTTCACCTCTCCTGACCACACTTCCAGGTACCTTTACGAGCAGAGAGCACCTGCTGCACGTGCAACAGTGTGTTTCCGTAACAGGAGGGAGAGGTGTGCTGGGTGTTGCATAGGATGGTGTATCTTTGTAGGCATCCTGGGGCAGTTGTACCTGTCTTGAGGCAAGGCAAAGTGCCTCTGCTTTAGTGCCAGGAGCTGGGATTCCTTTTGCAAAACATTTAGTGTCATGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971-'9-14,'9-12,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.1=100)
A:
PF091386=Urm1=FE(16.7=100)
C2:
PF091386=Urm1=PD(21.9=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGAGCGGCCGGAATTA
R:
GGGTTTGGATTCACGTCCTTGT
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]