DreEX0083556 @ danRer10
Exon Skipping
Gene
ENSDARG00000091198 | urm1
Description
ubiquitin related modifier 1 [Source:ZFIN;Acc:ZDB-GENE-091204-300]
Coordinates
chr10:10365698-10367787:+
Coord C1 exon
chr10:10365698-10365779
Coord A exon
chr10:10366711-10366759
Coord C2 exon
chr10:10367104-10367787
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTACACACACACAGTAG
3' ss Score
3.22
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGGACATGAAGCAGCTGCTGGCGTGGATCCGAGGGAACATGCTAAAGGAGCGCCCAGAGCTTTTTATGCAGGGCGACACTGT
Seq A exon
TAGACCTGGGATTCTGGTATTGATTAACGACGCAGACTGGGAACTGATG
Seq C2 exon
GGAGAATTGGACTACCAACTTCAGGACAAGGATAACGTTGTCTTTATTTCCACACTTCATGGAGGCTAAACGACTCTAAAAGATACACCGCACCCATACAGGAGCCCCTTCACAATTCAAAAGGTCAAATATTCGATGATCCATCAACAGCGGCATTGGTGACTGATTTAAGTTCCAGTTGTGGACTTCTCGACCAATCGAGACTTGTGAAAAGCTATTTTAGCTATAAGTCTAAAGTGTATAATGTCGTTGGGAATCTGGCGTTGGAGGGACAGTTCACTGTCCCATGTACCTTTCAGGAGTGTGGCGGGGTTACGATGGAGAGCAAGGGCTCATTAAGAAGGTCACCCTGTCTAGCCAGTGTCCAGATGGATTCTCTTGAGACATGGTGGACCGATTGCCCCATGTCAAATGGCTCCGTTATAATTTTCTTTTCGATGCCTTTTCAGTTCTATCTACCTTTTATACATAAAAGTGCTTTTATGTATAATCTGAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091198_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.4=100)
A:
PF091386=Urm1=FE(15.8=100)
C2:
PF091386=Urm1=PD(22.1=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGCCCAGAGCTTTTTAT
R:
TCCTGTATGGGTGCGGTGTAT
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]