HsaEX6063228 @ hg19
Exon Skipping
Gene
ENSG00000167118 | URM1
Description
ubiquitin related modifier 1 [Source:HGNC Symbol;Acc:28378]
Coordinates
chr9:131150095-131153013:+
Coord C1 exon
chr9:131150095-131150176
Coord A exon
chr9:131151540-131151588
Coord C2 exon
chr9:131151945-131153013
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACCACCATCTTTCCCACAGGCG
3' ss Score
9.92
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGGACATCCGGAACCTGCTCATCTGGATCAAGAAGAATTTGCTAAAAGAGCGGCCAGAGTTGTTCATCCAGGGAGACAGCGT
Seq A exon
GCGGCCAGGAATTCTGGTGCTGATTAACGATGCCGACTGGGAGCTACTG
Seq C2 exon
GGTGAGCTGGACTACCAGCTTCAGGACCAGGACAGCGTCCTCTTCATCTCCACTCTGCACGGCGGCTGAGGGCCCTTCTCTGGGCCTGGGCACCCTTAGAGGGGAGAACGAAGCAATCAGACATCCCCTTGGGCCCTGCTTCCAGGTCTCCCTGTCCCCCTTGCCTGCCTTCTTCCCTGCTCTGTCCCCTAAGCTCCCTCCAGGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTTTCTCAAGCACGTGAGCAGCGGAAGGCAGACAGGCGCCAGAGCCCAGCACTCCCTTTTCCAGCAGCTGTGGTGGGGGAGGGTTCCCCTCCAGTTTGTCAAGAGTTGAAGGAGGCTCTGTGGCCAGGTGACCTGGCTGCCTTCCACTCCTTGTACCTCAGTCTAAACATGGAGTGGCCGCTGACAAGGCGCTCCAGCCCCAGAGCCAGCGTCTTCATGGGGAAGATGAATGGACCTGAGTAGCTGAAGGAAGGCCCCTCCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167118-'5-8,'5-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PD(46.6=93.1)
A:
PF091386=Urm1=FE(16.7=100)
C2:
PF091386=Urm1=PD(21.9=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCGGAACCTGCTCATC
R:
TGGAGATGAAGAGGACGCTGT
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)