RnoEX0096867 @ rn6
Exon Skipping
Gene
ENSRNOG00000026636 | Urm1
Description
ubiquitin related modifier 1 [Source:RGD Symbol;Acc:1306599]
Coordinates
chr3:8402562-8405868:+
Coord C1 exon
chr3:8402562-8402643
Coord A exon
chr3:8404504-8404552
Coord C2 exon
chr3:8404881-8405868
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACTACCCTCTTCCCCACAGGCG
3' ss Score
10.32
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGGATATCCGGAACCTCCTTGTCTGGATCAAGACGAATTTGCTAAAAGAGCGGCCAGAGCTATTCATCCAGGGAGACAGTGT
Seq A exon
GCGGCCTGGAATCCTGGTCCTGATTAATGATGCCGACTGGGAACTGCTG
Seq C2 exon
GGAGAGCTGGACTACCAGCTGCAGGACCAGGATAGCATCCTCTTCATCTCCACCCTGCATGGCGGCTGAGGCCTCCTCGATTAGCCCAAGCACCTTTGCAAGGGGAACACAGGACAACCACAGACCCCTCGGATGCTTCCAGGTCCTCCGTCCCCCTTGGCTGCCTCCTTCCCTGCTGTACCCCTGAGCTTCCTGTATGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTTTCTGGGCAAGGCGGCACGTGAGCAGGGAGAGAGAGCAGGGAGGGAGAGCAGCCGCCTGAGCCCAGCACTCCTTCCAGCAGCTGAGGTGGGGGAGGGTGCTCCTGTGCTGTGTCAGGAGTGGAGGGGCTCTGTGCCCAGGTGACCCAGCTGCTTGCTGCTACGTCTTGGTGTATGTATGCTCTTAGTGGTGGCCTGGAAGGCACTCCAGTTCCCGAGACATCTTCATGGGGAAGATGGATGGACTGTAGTAACTGATGAGAGGCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026636-'10-7,'10-6,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.1=100)
A:
PF091386=Urm1=FE(16.7=100)
C2:
PF091386=Urm1=PD(21.9=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAGAGCTATTCATCCAG
R:
GTCCTGTGTTCCCCTTGCAAA
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]