HsaEX6063228 @ hg38
Exon Skipping
Gene
ENSG00000167118 | URM1
Description
ubiquitin related modifier 1 [Source:HGNC Symbol;Acc:HGNC:28378]
Coordinates
chr9:128387816-128392016:+
Coord C1 exon
chr9:128387816-128387897
Coord A exon
chr9:128389261-128389309
Coord C2 exon
chr9:128389666-128392016
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACCACCATCTTTCCCACAGGCG
3' ss Score
9.92
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGGACATCCGGAACCTGCTCATCTGGATCAAGAAGAATTTGCTAAAAGAGCGGCCAGAGTTGTTCATCCAGGGAGACAGCGT
Seq A exon
GCGGCCAGGAATTCTGGTGCTGATTAACGATGCCGACTGGGAGCTACTG
Seq C2 exon
GGTGAGCTGGACTACCAGCTTCAGGACCAGGACAGCGTCCTCTTCATCTCCACTCTGCACGGCGGCTGAGGGCCCTTCTCTGGGCCTGGGCACCCTTAGAGGGGAGAACGAAGCAATCAGACATCCCCTTGGGCCCTGCTTCCAGGTCTCCCTGTCCCCCTTGCCTGCCTTCTTCCCTGCTCTGTCCCCTAAGCTCCCTCCAGGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTTTCTCAAGCACGTGAGCAGCGGAAGGCAGACAGGCGCCAGAGCCCAGCACTCCCTTTTCCAGCAGCTGTGGTGGGGGAGGGTTCCCCTCCAGTTTGTCAAGAGTTGAAGGAGGCTCTGTGGCCAGGTGACCTGGCTGCCTTCCACTCCTTGTACCTCAGTCTAAACATGGAGTGGCCGCTGACAAGGCGCTCCAGCCCCAGAGCCAGCGTCTTCATGGGGAAGATGAATGGACCTGAGTAGCTGAAGGAAGGCCCCTCCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167118-'11-16,'11-15,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.281 C2=0.253
Domain overlap (PFAM):
C1:
PF091386=Urm1=PD(46.6=93.1)
A:
PF091386=Urm1=FE(16.7=100)
C2:
PF091386=Urm1=PD(21.9=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCGGAACCTGCTCATC
R:
TGGAGATGAAGAGGACGCTGT
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains