GgaEX1062374 @ galGal4
Exon Skipping
Gene
ENSGALG00000004971 | URM1
Description
Ubiquitin-related modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJU4]
Coordinates
chr17:4949346-4953284:-
Coord C1 exon
chr17:4953203-4953284
Coord A exon
chr17:4952127-4952175
Coord C2 exon
chr17:4949346-4951445
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATTATTTCTGTGTTCTGCAGGAG
3' ss Score
9.73
5' ss Seq
ATGGTCTGT
5' ss Score
2.86
Exon sequences
Seq C1 exon
GGGATATCAGAAACCTGCTAAAGTGGATCAAACAGAATCTGCTGAAAGAGCGGCCGGAATTATTTATGCAAGGGGAATCTGT
Seq A exon
GAGGCCAGGAATTTTGGTGCTCATCAACGACGCAGACTGGGAGCTAATG
Seq C2 exon
GGTGAGCTGGATTATAAACTCCAGGACCAGGATAATGTGCTTTTCATCTCGACGTTACATGGTGGGTGAACTCCTGGAAAAAGACAAGGACGTGAATCCAAACCCTTGGGCAAACAAACACCTAAACCCACCCAAACCTCTCTCGAACTGTCTGTGCCTGACCCCTGCATCATCCCACCACCTCCACTTGTTAACAGACATCCAAATAAAGCCCCGTCAGCACACAGCCTGCTGCGTACTGCTACGGCATCCATCTTTTGGTCCTCATTTCACCTCTCCTGACCACACTTCCAGGTACCTTTACGAGCAGAGAGCACCTGCTGCACGTGCAACAGTGTGTTTCCGTAACAGGAGGGAGAGGTGTGCTGGGTGTTGCATAGGATGGTGTATCTTTGTAGGCATCCTGGGGCAGTTGTACCTGTCTTGAGGCAAGGCAAAGTGCCTCTGCTTTAGTGCCAGGAGCTGGGATTCCTTTTGCAAAACATTTAGTGTCATGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971-'15-16,'15-13,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.1=100)
A:
PF091386=Urm1=FE(16.7=100)
C2:
PF091386=Urm1=PD(21.9=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGAGCGGCCGGAATTA
R:
GGGTTTGGATTCACGTCCTTGT
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]