MmuEX6100106 @ mm9
Exon Skipping
Gene
ENSMUSG00000069020 | Urm1
Description
ubiquitin related modifier 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915455]
Coordinates
chr2:29696922-29698665:+
Coord C1 exon
chr2:29696922-29697003
Coord A exon
chr2:29698241-29698289
Coord C2 exon
chr2:29698623-29698665
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACTACCCTCTTTCCCACAGGCG
3' ss Score
10.3
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGGATATACGGAACCTCCTTGTCTGGATCAAGAAGAATTTGCTAAAAGAGCGACCAGAGCTGTTCATCCAGGGAGACAGTGT
Seq A exon
GCGGCCAGGAATCCTGGTGCTGATTAATGATGCCGACTGGGAACTGCTG
Seq C2 exon
GGGGAGCTGGACTACCAGCTGCAGGACCAAGACAGCATCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069020-'4-12,'4-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=FE(28.1=100)
A:
PF091386=Urm1=FE(16.7=100)
C2:
PF091386=Urm1=PD(21.9=91.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATACGGAACCTCCTTGT
R:
AGAGGATGCTGTCTTGGTCCT
Band lengths:
125-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: