MmuINT0161939 @ mm9
Intron Retention
Gene
ENSMUSG00000026963 | Tmem210
Description
transmembrane protein 210 [Source:MGI Symbol;Acc:MGI:1925467]
Coordinates
chr2:25143665-25144072:+
Coord C1 exon
chr2:25143665-25143782
Coord A exon
chr2:25143783-25143936
Coord C2 exon
chr2:25143937-25144072
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
TTGTGGCCTTGTTTCTGCAGCTG
3' ss Score
9.9
Exon sequences
Seq C1 exon
AGAGGTGTGTGGTGGGGTTGGGGGCTGGACATGGCCCCCTGTCCCCAGCCTGAATCCTGCCCAGCTGGCAGCCCCCTTGGCCTGATATGTCTGTCCCTTTTGCTCATCCCTGCTTCAG
Seq A exon
GTGCCTCCTCCCAGTAGCCCTCCAGCCAAAACCCCTCCCTTTTCCAGACAGGGCAAGCCATTTGTGTCCTTCAAGGGCCACAGGGTGGGAGGTGGACCTGAGGTCCTCCACAGGCAGGTGACTGGCCCCTGGTCTTGTGGCCTTGTTTCTGCAG
Seq C2 exon
CTGGAACCTACTGTGAATGCAGCCTTGGCCTCAGCCGTGAGGCCCTTATTGCCCTCATTGTGGTGCTGGCTGGTGTCAGTGCCAGCTGCTTCTGTGCCCTCGTTGTTGTGGCGATTGGTGTCTTTCGGGCCAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026963-Tmem210:NM_030055:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF151951=TMEM210=PU(37.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGTGTGGTGGGGTTG
R:
TTGGCCCGAAAGACACCAATC
Band lengths:
251-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: