MmuINT0161939 @ mm10
Intron Retention
Gene
ENSMUSG00000026963 | Tmem210
Description
transmembrane protein 210 [Source:MGI Symbol;Acc:MGI:1925467]
Coordinates
chr2:25288145-25288552:+
Coord C1 exon
chr2:25288145-25288262
Coord A exon
chr2:25288263-25288416
Coord C2 exon
chr2:25288417-25288552
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
TTGTGGCCTTGTTTCTGCAGCTG
3' ss Score
9.9
Exon sequences
Seq C1 exon
AGAGGTGTGTGGTGGGGTTGGGGGCTGGACATGGCCCCCTGTCCCCAGCCTGAATCCTGCCCAGCTGGCAGCCCCCTTGGCCTGATATGTCTGTCCCTTTTGCTCATCCCTGCTTCAG
Seq A exon
GTGCCTCCTCCCAGTAGCCCTCCAGCCAAAACCCCTCCCTTTTCCAGACAGGGCAAGCCATTTGTGTCCTTCAAGGGCCACAGGGTGGGAGGTGGACCTGAGGTCCTCCACAGGCAGGTGACTGGCCCCTGGTCTTGTGGCCTTGTTTCTGCAG
Seq C2 exon
CTGGAACCTACTGTGAATGCAGCCTTGGCCTCAGCCGTGAGGCCCTTATTGCCCTCATTGTGGTGCTGGCTGGTGTCAGTGCCAGCTGCTTCTGTGCCCTCGTTGTTGTGGCGATTGGTGTCTTTCGGGCCAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026963:ENSMUST00000028340:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF151951=TMEM210=PU(37.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGTGTGGTGGGGTTG
R:
TTGGCCCGAAAGACACCAATC
Band lengths:
251-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types