HsaINT1044487 @ hg38
Intron Retention
Gene
ENSG00000185863 | TMEM210
Description
transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
Coordinates
chr9:137171641-137172409:-
Coord C1 exon
chr9:137171940-137172409
Coord A exon
chr9:137171777-137171939
Coord C2 exon
chr9:137171641-137171776
Length
163 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
ATGTGGCCCTGTCTCTGCAGCTG
3' ss Score
10.36
Exon sequences
Seq C1 exon
GAAGGATTTGGCTGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGAGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCACTGAAGGACTGCCCGTAAGACCAGGCCAGCCCCACTGCTGCCTCTGCCTCAGAGCTGGCCTGAGCTGGCTGGGCTCTCAGGCCTCTGCCCACCCTACCTGTCCCATTCCCAGAGCTGCTTGGCCATGGCTCCTTGAATTGCGGTGCCCAAGGGCAAATGACACACTGGCATTGTGAGCCCCCCCACCCCCACCTCACAGTCCTACTGTGAAGTCAGCACCTTCCAACAGTTCCGTCAGAGGTGTGCAGTGGGGCCAGGGCTGGACATGGCCCCCGGTCCCTGGCCTGTGTCCTGCCTGCGTGGTGGCCCCTTGGGCCTCACATATTTGTCCCTTCTGCTCATCCCTGCTGCAG
Seq A exon
GTGCCTCCTCCTGCCCCCGCACTCCACTCCCAGCCATGGCTCCCCTTCCCCAGGCAAGGTGGGAGCTCTGGTGTCCTTCTGGTGGCTACCAGGGCAGGGGCAGACTTGGGGGCCCTCTGCAGGCAGGTGACCGGCCCATGGCCATGTGGCCCTGTCTCTGCAG
Seq C2 exon
CTGGAACCTACTGTGAATGCAGCCTTGGCCTCAGCCGCGAGGCCCTCATCGCCCTCCTTGTGGTGCTGGCGGGCATCAGTGCCAGCTGCTTCTGTGCCCTCGTCATCGTGGCAATTGGTGTCTTGCGGGCCAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185863:ENST00000413619:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF151951=TMEM210=PU(37.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACAGTTCCGTCAGAGGT
R:
ACCAATTGCCACGATGACGAG
Band lengths:
251-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains