MmuEX0047900 @ mm9
Exon Skipping
Gene
ENSMUSG00000026963 | Tmem210
Description
transmembrane protein 210 [Source:MGI Symbol;Acc:MGI:1925467]
Coordinates
chr2:25143665-25144314:+
Coord C1 exon
chr2:25143665-25143782
Coord A exon
chr2:25143937-25144072
Coord C2 exon
chr2:25144285-25144314
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTGTGGCCTTGTTTCTGCAGCTG
3' ss Score
9.9
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
AGAGGTGTGTGGTGGGGTTGGGGGCTGGACATGGCCCCCTGTCCCCAGCCTGAATCCTGCCCAGCTGGCAGCCCCCTTGGCCTGATATGTCTGTCCCTTTTGCTCATCCCTGCTTCAG
Seq A exon
CTGGAACCTACTGTGAATGCAGCCTTGGCCTCAGCCGTGAGGCCCTTATTGCCCTCATTGTGGTGCTGGCTGGTGTCAGTGCCAGCTGCTTCTGTGCCCTCGTTGTTGTGGCGATTGGTGTCTTTCGGGCCAAGGG
Seq C2 exon
TGACACGTGCCCTGGACACTCGGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026963_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
PF151951=TMEM210=PU(37.1=93.5)
C2:
PF151951=TMEM210=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGTGTGGTGGGGTTG
R:
CTGTTTTCCGAGTGTCCAGGG
Band lengths:
148-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: