MmuEX0047900 @ mm10
Exon Skipping
Gene
ENSMUSG00000026963 | Tmem210
Description
transmembrane protein 210 [Source:MGI Symbol;Acc:MGI:1925467]
Coordinates
chr2:25288145-25288794:+
Coord C1 exon
chr2:25288145-25288262
Coord A exon
chr2:25288417-25288552
Coord C2 exon
chr2:25288765-25288794
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTGTGGCCTTGTTTCTGCAGCTG
3' ss Score
9.9
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
AGAGGTGTGTGGTGGGGTTGGGGGCTGGACATGGCCCCCTGTCCCCAGCCTGAATCCTGCCCAGCTGGCAGCCCCCTTGGCCTGATATGTCTGTCCCTTTTGCTCATCCCTGCTTCAG
Seq A exon
CTGGAACCTACTGTGAATGCAGCCTTGGCCTCAGCCGTGAGGCCCTTATTGCCCTCATTGTGGTGCTGGCTGGTGTCAGTGCCAGCTGCTTCTGTGCCCTCGTTGTTGTGGCGATTGGTGTCTTTCGGGCCAAGGG
Seq C2 exon
TGACACGTGCCCTGGACACTCGGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026963-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
PF151951=TMEM210=PU(37.1=93.5)
C2:
PF151951=TMEM210=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGTGTGGTGGGGTTG
R:
CTGTTTTCCGAGTGTCCAGGG
Band lengths:
148-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types