RnoEX0091575 @ rn6
Exon Skipping
Gene
ENSRNOG00000040275 | Tmem210
Description
transmembrane protein 210 [Source:RGD Symbol;Acc:2318321]
Coordinates
chr3:2504694-2505319:+
Coord C1 exon
chr3:2504694-2504760
Coord A exon
chr3:2504923-2505058
Coord C2 exon
chr3:2505290-2505319
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTGTGGCCTTGTTTCTGCAGCTG
3' ss Score
9.9
5' ss Seq
GGAGTGCGT
5' ss Score
1.92
Exon sequences
Seq C1 exon
ATGGACTCCTGCCCAGCTGGCCCCCTTGGCCTGATATGTCTGTCCCTTGTGCTCATACCTGCTTCAG
Seq A exon
CTGGAACCTACTGTGAATGCAGCCTCGGTCTCAGCCGTGAGGCCCTTATTGCCCTCATTGTGGTGCTGGCTGGTATCAGTGCCAGCTGCTTCTGTGCCCTCGTTGTTGTGGCGCTTGGTGTCTTTCGGGCCAAGGA
Seq C2 exon
TGACACGTGCCCTGGACACTCGGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000040275-'2-1,'2-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
PF151951=TMEM210=PU(37.1=93.5)
C2:
PF151951=TMEM210=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACTCCTGCCCAGCTG
R:
CTGTTTTCCGAGTGTCCAGGG
Band lengths:
97-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]