BtaEX6047553 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047964 | TMEM210
Description
transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
Coordinates
chr11:105918626-105919219:+
Coord C1 exon
chr11:105918626-105918713
Coord A exon
chr11:105918835-105918970
Coord C2 exon
chr11:105919190-105919219
Length
136 bp
Sequences
Splice sites
3' ss Seq
GCCCGGCCGTGTCTCTGCAGCTG
3' ss Score
10.11
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
ATGGCCGCCTGTCCCCAGCCCGACTCCCGCCTGCTCGGCGGCCCCCTCGGCCTCATGTGCCTGTCCCTTTTGCTCATCCCTGCTGCAG
Seq A exon
CTGGAGCCTACTGCGAGTGCAGCCTCGGCCTCAGCCGCGAGGCCCTCATCGCCCTGCTGGTGGTGCTGGCGGGCATCAGCGCTAGCTGCTTCTGCGCCCTGGTCATCGTGGCCGTTGGTGTCATTCGAGCCAAGGG
Seq C2 exon
TGAAACGTGCCCTGCACACATGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047964-'2-1,'2-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF151951=TMEM210=PU(36.4=93.5)
C2:
PF151951=TMEM210=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCCAGCCCGACTC
R:
CTGCTGTCCATGTGTGCAGG
Band lengths:
110-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]