MmuEX0010633 @ mm9
Exon Skipping
Gene
ENSMUSG00000009555 | Cdk9
Description
cyclin-dependent kinase 9 (CDC2-related kinase) [Source:MGI Symbol;Acc:MGI:1328368]
Coordinates
chr2:32564987-32565729:-
Coord C1 exon
chr2:32565563-32565729
Coord A exon
chr2:32565293-32565464
Coord C2 exon
chr2:32564987-32565135
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTGTCCTCCCTTCAGATC
3' ss Score
12.52
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCTCACCGTATAACCGCTGCAAGGGCAGCATCTATCTGGTGTTTGACTTCTGTGAGCATGACCTTGCTGGGCTGCTGAGCAACGTCTTAGTCAAGTTCACGTTGTCTGAGATCAAGAGAGTGATGCAGATGCTGCTGAACGGCCTCTACTACATCCACAGGAACAAG
Seq A exon
ATCCTGCACAGGGACATGAAGGCTGCGAATGTGCTCATTACCCGGGATGGGGTCCTGAAGCTGGCAGATTTTGGGCTGGCCCGTGCCTTCAGCCTAGCTAAGAATAGCCAGCCCAACCGATACACCAACCGTGTGGTGACATTGTGGTACCGGCCTCCGGAGCTGCTGCTCG
Seq C2 exon
GAGAGCGGGACTACGGCCCGCCCATTGACCTTTGGGGTGCTGGGTGCATCATGGCAGAGATGTGGACTCGTAGCCCTATCATGCAGGGTAACACAGAGCAGCACCAGCTCGCCCTCATCAGCCAGCTCTGTGGCTCCATCACCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009555-'8-12,'8-10,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.5=100)
A:
PF0006920=Pkinase=FE(19.2=100)
C2:
PF0006920=Pkinase=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGCATCTATCTGGTGT
R:
GTGCTGCTCTGTGTTACCCTG
Band lengths:
250-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: