HsaEX6063129 @ hg38
Exon Skipping
Gene
ENSG00000136807 | CDK9
Description
cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]
Coordinates
chr9:127787947-127788692:+
Coord C1 exon
chr9:127787947-127788113
Coord A exon
chr9:127788214-127788385
Coord C2 exon
chr9:127788544-127788692
Length
172 bp
Sequences
Splice sites
3' ss Seq
CACTCTTGCCCTTCCTGCAGATC
3' ss Score
11.52
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTCCCCCTATAACCGCTGCAAGGGTAGTATATACCTGGTGTTCGACTTCTGCGAGCATGACCTTGCTGGGCTGTTGAGCAATGTTTTGGTCAAGTTCACGCTGTCTGAGATCAAGAGGGTGATGCAGATGCTGCTTAACGGCCTCTACTACATCCACAGAAACAAG
Seq A exon
ATCCTGCATAGGGACATGAAGGCTGCTAATGTGCTTATCACTCGTGATGGGGTCCTGAAGCTGGCAGACTTTGGGCTGGCCCGGGCCTTCAGCCTGGCCAAGAACAGCCAGCCCAACCGCTACACCAACCGTGTGGTGACACTCTGGTACCGGCCCCCGGAGCTGTTGCTCG
Seq C2 exon
GGGAGCGGGACTACGGCCCCCCCATTGACCTGTGGGGTGCTGGGTGCATCATGGCAGAGATGTGGACCCGCAGCCCCATCATGCAGGGCAACACGGAGCAGCACCAACTCGCCCTCATCAGTCAGCTCTGCGGCTCCATCACCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136807-'12-11,'12-7,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.5=100)
A:
PF0006920=Pkinase=FE(19.2=100)
C2:
PF0006920=Pkinase=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGACTTCTGCGAGCATGAC
R:
CTGACTGATGAGGGCGAGTTG
Band lengths:
251-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains