GgaEX6015027 @ galGal3
Exon Skipping
Gene
ENSGALG00000005045 | CDK9_CHICK
Description
NA
Coordinates
chr17:5526438-5527162:-
Coord C1 exon
chr17:5526996-5527162
Coord A exon
chr17:5526660-5526831
Coord C2 exon
chr17:5526438-5526586
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCATGTCTGTCCTTGTACAGATC
3' ss Score
9.46
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
CCTCTCCATACAACCGCTGCAAGGGAAGTATCTACCTGGTGTTTGACTTCTGTGAGCACGACCTGGCTGGCCTTCTCAGCAACACCCACGTCAAGTTCACGCTCTCAGAGATCAAGAAAGTTATGCAGATGCTATTGAATGGACTGTATTACATCCACAGGAACAAG
Seq A exon
ATCTTGCATCGAGATATGAAAGCTGCAAACGTTCTGATCACGCGGGATGGAGTCCTGAAGCTTGCAGACTTTGGGCTGGCTCGAGCTTTCAGCCTGGCTAAGAACAGCCAGCCGAACCGCTACACCAACCGGGTCGTGACTCTGTGGTATCGGCCGCCGGAGCTGCTGCTAG
Seq C2 exon
GGGAGCGGGACTACGGGCCCCCCATTGACCTCTGGGGTGGAGGCTGCATCATGGCAGAGATGTGGACCCGCAGCCCCATCATGCAGGGGAACACGGAGCAGCACCAGCTCACCCTCATTAGCCAGCTCTGCGGATCCATCACACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005045-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.5=100)
A:
PF0006920=Pkinase=FE(19.2=100)
C2:
PF0006920=Pkinase=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTGTGAGCACGACCTG
R:
CTAATGAGGGTGAGCTGGTGC
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]