BtaEX0008254 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004695 | CDK9
Description
Bos taurus cyclin-dependent kinase 9 (CDK9), mRNA. [Source:RefSeq mRNA;Acc:NM_001014935]
Coordinates
chr11:98476467-98477230:+
Coord C1 exon
chr11:98476467-98476633
Coord A exon
chr11:98476747-98476918
Coord C2 exon
chr11:98477082-98477230
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCGCCTTGTGCTTCCTGCAGATC
3' ss Score
11.06
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTCCCCCTATAACCGCTGCAAAGGCAGTATATACCTGGTGTTTGACTTCTGTGAGCATGATCTTGCTGGGCTGCTGAGCAACGTTTTAGTCAAGTTCACACTATCTGAGATCAAGAGGGTCATGCAGATGTTGCTTAACGGCCTCTACTACATCCATAGGAACAAG
Seq A exon
ATCCTGCACCGGGACATGAAGGCGGCTAACGTGCTCATCACCCGCGATGGGGTTCTGAAGCTGGCGGACTTTGGGCTGGCCCGGGCCTTCAGCCTGGCCAAGAACAGCCAGCCCAACCGCTACACCAACCGTGTGGTGACCCTCTGGTACCGGCCCCCAGAGCTGTTGCTCG
Seq C2 exon
GGGAGCGGGACTACGGCCCCCCCATTGATCTGTGGGGTGCTGGGTGCATCATGGCGGAGATGTGGACCCGCAGCCCCATCATGCAGGGCAACACGGAGCAGCACCAACTCGCCCTCATCAGCCAGCTCTGCGGCTCCATCACCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004695_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.5=100)
A:
PF0006920=Pkinase=FE(19.2=100)
C2:
PF0006920=Pkinase=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTATAACCGCTGCAAAGG
R:
GTGTTGCCCTGCATGATGGG
Band lengths:
257-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development