DreEX0020500 @ danRer10
Exon Skipping
Gene
ENSDARG00000044811 | cdk9
Description
cyclin-dependent kinase 9 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-321]
Coordinates
chr21:6040389-6042691:+
Coord C1 exon
chr21:6040389-6040555
Coord A exon
chr21:6041989-6042160
Coord C2 exon
chr21:6042543-6042691
Length
172 bp
Sequences
Splice sites
3' ss Seq
TATTATGTGTTTTGTTTCAGATC
3' ss Score
12.08
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
CCACCCAGTTTAACCGTTACAAGGGCAGCATTTATCTGGTGTTTGACTTCTGTGAGCACGACCTCGCTGGACTGCTGAGCAACGCTAATGTTAAGTTCACTCTGGCGGAGATCAAGAGGGTCATGCAGATGCTGCTCAACGGACTCTACTACATACACAGAAACAAG
Seq A exon
ATCCTCCACAGAGACATGAAAGCAGCCAATGTCCTGATCACCAGAGATGGTGTCCTGAAGCTGGCTGATTTCGGTCTGGCCCGAGCCTTCAGTTTGGCTAAAAACAGTCAGGGGAATCGCTACACAAATCGGGTGGTCACTCTGTGGTATAGACCGCCTGAACTACTGCTGG
Seq C2 exon
GCGAGAGAGACTACGGGCCTCCCATAGACCTGTGGGGCGCGGGGTGCATCATGGCGGAGATGTGGACCAGAAGCCCCATCATGCAGGGCAACACAGAGCAGCACCAGCTCACACTCATCAGTCAGCTGTGCGGATCCATCACTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044811_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.5=100)
A:
PF0006920=Pkinase=FE(19.1=100)
C2:
PF0006920=Pkinase=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTTACAAGGGCAGCATTT
R:
CTCTGTGTTGCCCTGCATGAT
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]