MmuINT0010613 @ mm9
Intron Retention
Gene
ENSMUSG00000052155 | Acvr2a
Description
activin receptor IIA [Source:MGI Symbol;Acc:MGI:102806]
Coordinates
chr2:48728577-48728993:+
Coord C1 exon
chr2:48728577-48728686
Coord A exon
chr2:48728687-48728838
Coord C2 exon
chr2:48728839-48728993
Length
152 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TCCTCTTCCCTCTTTTGCAGCCA
3' ss Score
11.81
Exon sequences
Seq C1 exon
GACTGATTGTATAGAAAAAAAAGACAGCCCTGAAGTGTACTTTTGTTGCTGTGAGGGCAATATGTGTAATGAAAAGTTCTCTTATTTTCCGGAGATGGAAGTCACACAGC
Seq A exon
GTAAGTGCATAGTGAAAATATACATTTGTGTTGTTGACTAATTTACTACTTTCTTATACTCTATCCCTCCAACCCCTGGCTCTCATCTATGGTTACTACTTATAGGTTTGTGTAGACCAAATCCGAGCCATTTCCTCTTCCCTCTTTTGCAG
Seq C2 exon
CCACTTCAAATCCTGTTACACCGAAGCCACCCTATTACAACATTCTGCTGTATTCCTTGGTACCACTAATGTTAATTGCAGGAATTGTCATTTGTGCATTTTGGGTGTACAGACATCACAAGATGGCCTACCCTCCTGTACTTGTTCCTACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052155-Acvr2a:NM_007396:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAGCCCTGAAGTGTACT
R:
AGTAGGAACAAGTACAGGAGGGT
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: