BtaINT0013489 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48411976-48412431:-
Coord C1 exon
chr2:48412322-48412431
Coord A exon
chr2:48412131-48412321
Coord C2 exon
chr2:48411976-48412130
Length
191 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CTTCCTCCTCTTTTCCACAGCTA
3' ss Score
11.28
Exon sequences
Seq C1 exon
GACTGATTGTATAGAAAAAAAAGATAGCCCTGAAGTATATTTTTGTTGCTGTGAGGGCAATATGTGTAACGAAAGGTTTTCTTATTTTCCGGAGATGGAGGTCACACAGC
Seq A exon
GTAAGTTCACTGGGAAAACACATAAGTCTGTTCAACTATTAGATTGAAAACAAAGCATGTTTGTGTTAGAATAATTTGCTCCCACCTTCTCCTCCTCTCTTTTTCTCCTACAATTTGGCACTATAATAAATATTTATTGTGGAATTTTATTGACCAAACCTGAATGATTTTCTTCCTCCTCTTTTCCACAG
Seq C2 exon
CTACGTCGAATCCAGTAACTCCTAAGCCTCCCTATTACAACATCTTGCTCTATTCTTTGGTGCCACTTATGTTAATTGCGGGGATTGTCATTTGTGCATTTTGGGTGTACAGACATCATAAGATGGCTTACCCTCCTGTGCTCGTTCCAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114:ENSBTAT00000024108:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCCCTGAAGTATATTTTTGTTGC
R:
TTGAGTTGGAACGAGCACAGG
Band lengths:
242-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]