RnoINT0012784 @ rn6
Intron Retention
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33006347-33006797:+
Coord C1 exon
chr3:33006347-33006456
Coord A exon
chr3:33006457-33006642
Coord C2 exon
chr3:33006643-33006797
Length
186 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TCCTCTCCCCTCTTTCACAGCCA
3' ss Score
10.16
Exon sequences
Seq C1 exon
GACTGATTGTATAGAAAAAAAAGACAGCCCTGAAGTGTACTTTTGTTGCTGTGAGGGCAATATGTGTAATGAAAAGTTCTCTTATTTTCCGGAGATGGAAGTCACACAGC
Seq A exon
GTAAGTGTATATTGAAAATACATGCTTGTTCTGCTAGTAGATTGAAAAGGAAATATTTTGTGTTGAGTAATTTACTACTGCTTTCTTATACTCCATCCCCCACTTTCCAGCCCCCAGCTGTGGTAACGACTTATTATAGGATTGTGTAAACCAAATCCGAGCCATTTCCTCTCCCCTCTTTCACAG
Seq C2 exon
CCACATCAAATCCTGTTACCCCGAAACCACCCTACTACAACATCCTGCTGTATTCCTTGGTACCACTTATGTTAATTGCGGGGATTGTCATTTGTGCGTTTTGGGTGTACAGACATCACAAGATGGCCTACCCTCCTGTACTTGTTCCTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334:ENSRNOT00000007404:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAGCCCTGAAGTGTACT
R:
AGTAGGAACAAGTACAGGAGGGT
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]