MmuINT0019318 @ mm9
Intron Retention
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24781276-24781965:-
Coord C1 exon
chr2:24781792-24781965
Coord A exon
chr2:24781715-24781791
Coord C2 exon
chr2:24781276-24781714
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
CAATACCTACATTTTTCCAGGTC
3' ss Score
6.35
Exon sequences
Seq C1 exon
GTATCCTATAAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGTACAGGTGTCAAGGCCTGGAGGCGTGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCCCAGTCAGCCCTGCCTGGCTGCAGCCTTATCCATATCGACTATTACCTTCAG
Seq A exon
GTTTGGTGTTGCCCAGGGCTGGGTGGCCTGAGGCTAGGTGGCCTTGGCCTGACTCCTCAATACCTACATTTTTCCAG
Seq C2 exon
GTCTCCATGAAGGCACCTGAGGCCACCGTGACTCTCCCACTATTTGTTGGCAATATTGCTGTGAACCAAACTCCACTGAGTCCCTGTCCAGGCCGAGAGTCTTCTCCTGGGACCCTATCCCTAGTGGTGCCCTCTGCACCACCCCAGGAAGAGGCTGAGGCAGTGGCTAGTGGCCCTCACTTCTCAGACCCAGTTTCTCTCTCCACCAAGAGCCACTCTCAGCAGCAGCCACTGTCGGCTCCCTTGGGTTCTGTGTCTGTCACCACCACTGAGCCCTGGGTTCAGGTTGGAAGCCCTGCTAGACATTCTCTGCACCCTCCCTTGTGCATCTCTATAGGTGCCACTGTCCCCTACTTTGCAGAAGGCTCTGCGGGCCCAGTACCCACCACCAGCGCCTTGATCCTCCCTCCAGAGTACAGTTCATGGGGCTACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972-Arrdc1:NM_178408:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.422
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=FE(46.4=100)
A:
NA
C2:
PF0275217=Arrestin_C=PD(16.0=13.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCAGAGGTGGAGGGTACA
R:
ATAGTGGGAGAGTCACGGTGG
Band lengths:
175-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: