GgaINT0124235 @ galGal3
Intron Retention
Gene
ENSGALG00000008475 | ARRDC1
Description
NA
Coordinates
chr17:2385303-2386117:+
Coord C1 exon
chr17:2385303-2385479
Coord A exon
chr17:2385480-2385711
Coord C2 exon
chr17:2385712-2386117
Length
232 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTTTTTCTTTCTCTTCCAGGTT
3' ss Score
13.79
Exon sequences
Seq C1 exon
AAAGTGGCTTACAAATCCAAGCGTTGGATTTACGACCTGAGGACCATCGCAGAGGTGGAAGGTTCAGGAGTAAAAGCCTGGAAACATGCAGAATGGAAGGAGCAGATCCTTGTTCCAGCACTGCCCCAGTCCATTCTGCAGGGCTGTAGCCTCATACATATCGATTACTATATCCAG
Seq A exon
GTGAGCAGCTTGATGCTCTGGTGGGTTGTGCTGCGGTTATGGGTGTGTGCTGGGGTCACCTCGTGGGTGTCAAAGATGTAGCTTTGCTGAGGAACTCAGTGTGACTTGTTTTGCTGGTCAGTAATGATGGGTGAGGCTGCTATTGTGCTCCGGCCCTCTTGTTAGGTGAGCCTACCTGTGCGCTATGCAATGCACGACAAAGAGGATTCCACTGTTTTTCTTTCTCTTCCAG
Seq C2 exon
GTTTCCCTCAAGTCACCAGAGGTTTCGGTCACCCTTCCCATTTATATCGGCAACATTGCAGTGAACAGGGTCCCCCTGAGCCCTTCCCGGTCTGTCCAGCACCTACCATCTGCAGTGGTACCCAGTGCCCCCCCGGAGGAAGAGGAGGCTGCCGGCGGTTATCACCCCATGGACAATGTCTTGATCCCCACCAAAAGCCATTCCCAGCAGCAGCCATTTAGCTACGCCCCAGGACTGAGCTTCCAGGAAGCGGACTCGGAGCAGACAGGCTCCCCAAATCACCCCACCCTCTGCCTCTCGACGGGAGCCACCGTCCCTTACTACGCCGAGGGAAACGTGGTGCCCGTGCCCACTGCTAGCTCGCTCATTTTGCCTCCAGAATACAGCACGTGGGGCTACCCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475:ENSGALT00000013811:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=FE(46.4=100)
A:
NA
C2:
PF0275217=Arrestin_C=PD(16.0=14.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGATCCTTGTTCCAGC
R:
CTAAATGGCTGCTGCTGGGAA
Band lengths:
300-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]