BtaINT0021743 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105542092-105542759:-
Coord C1 exon
chr11:105542583-105542759
Coord A exon
chr11:105542513-105542582
Coord C2 exon
chr11:105542092-105542512
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTA
5' ss Score
0.39
3' ss Seq
CACATGCACAACCTCCCTAGGTC
3' ss Score
6.11
Exon sequences
Seq C1 exon
AAAGTGTCCTACAAGGCCAGGCGCTGGATCTATGACGTGCGGACCATCGCCGAGGTGGAGGGAGCCGGCGTCAAGGCCTGGCGGCGGGCTCAGTGGCAAGAGCAGGTTCTGGTGCCCGCCCTGCCCCAGTCCGCCCTGCCAGGCTGTAGCCTCATCCACGTGGACTACTATCTGCAG
Seq A exon
GTGGTAGGGGTCAGGGGTGGGGTGGGAGGAGGGGCCGCGGCCTGGCTCCTCACATGCACAACCTCCCTAG
Seq C2 exon
GTCTCCCTGAAACAACCGGAAGCTGTCGTGACGCTGCCGGTCTTCATCGGCAACATCGCTGTGAACCATGTTCCATTGAGCCCCCGGCCAGGCCCCGGCCTGGTGGTGCCCTCAGCGCCACCCCAGGAGGAGGCGGAGGCTGTGGCCAGCGGCCCTCACTTCTTCTCGGATCCTGTCTCTCTCTCCACCAAGAGCCACTCCCAGCAGCAGCAGCTGCATGCAGCCCTTGGCTCTGTGCCCCATGGTGCCCCAGAACCCCGTCCTCAGGATGGCAGCCCTGCCCCGCACCCTCTGCCACCTCCCTTGTGCATCTCCACAGGTGCCACCGTGCCCTACTTTGCAGAGGGTTCTGGAGGTCCGGTGCCCACCTCCAGCACCCTGATCCTCCCCCCAGAGTACAGCTCGTGGGGCTACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147:ENSBTAT00000032616:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.582
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=FE(46.4=100)
A:
NA
C2:
PF0275217=Arrestin_C=PD(16.0=14.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCTATGACGTGCGGAC
R:
ACAGCTTCCGGTTGTTTCAGG
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development