DreINT0033636 @ danRer10
Intron Retention
Gene
ENSDARG00000068148 | arrdc1a
Description
arrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
Coordinates
chr5:28920167-28921113:-
Coord C1 exon
chr5:28920937-28921113
Coord A exon
chr5:28920672-28920936
Coord C2 exon
chr5:28920167-28920671
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TTTGTTTTCTGCTTTTCCAGGTC
3' ss Score
11.46
Exon sequences
Seq C1 exon
AAAGTCACCTATAATACCAAGAAGCCAACATATGACTTGCGGTCCGTAGCGGAGGTGGAAGGACCTGGAGTAAAGGGTGGAAATAAATCAGAATGGAATCAGCAGATCATTGTACCTGCTCTTCCTCACTCCTCCCTGAGCGATGGAAACCTCATCCAAATCTGCTATTACATTCAG
Seq A exon
GTCAGCTCTTTAAGTCACCTGTTTGCTACACAAATGTATTACATTGCCAAATCATATTGTGTGACAGACTCTTTCTTTCCTGTAAGTGATTTTCTCCATTGTGGAGCGTTTAATAACGGCTTGCTATTCCGTAATCCATAATCACTGGAAACATGCATATGAGGGAGATGTGCTTTATCAAAAGTTCATGCAAATTACAGTTAGTATTTCCTGCTTCCTTCCTCTTACTGAATCCCATCTGCACGTTTGTTTTCTGCTTTTCCAG
Seq C2 exon
GTCTATCTGAAATACCCCGAGGTGGCATTAACTCTGCCCATTTGCATTGGAAGCGTGGCATTGGATCCCTCTCAGCCTTCTCACTCCCAGACGGTTGCCCCTATGCCAGCCCCACGTATCACCCCTGCTCCATCTCCATCTGCTCCTGAATCTGAAGCTTCAAATCTGCCACCACGGCCAGCCCCAAAACCTGCACCCAAACCCAGGCCTCGCAGCACCCATGCTTCCCCCAGTGCGCCTCCAGTCGATCTGTACCCCCAGCTCCCAAGTGTGAGTAACTACAATGGAGAAATGCTCAAGAGCCCCCATCAAGAGCCGGGCTCTCAGGGTCCAGTGTCCCCCAATGCCTTCAGCTACGCTCCTGGCCTGAGCTTCAGACAGAGACAGAGCTCCAGCGGCCCATCAGCACCTCCTCCATCCTTATCCAGCAGCTCTCAGGACAGGAATCAGATGCCCTCTTCTGCGAGCGTGCCTCCCAGCTATAGGTCTTCAGCTTATCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068148:ENSDART00000098360:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=NA C2=0.876
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=FE(46.4=100)
A:
NA
C2:
PF0275217=Arrestin_C=PD(16.0=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCTGGAGTAAAGGGTGG
R:
CGTGGTGGCAGATTTGAAGCT
Band lengths:
294-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]