RnoINT0021396 @ rn6
Intron Retention
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2130290-2130983:-
Coord C1 exon
chr3:2130807-2130983
Coord A exon
chr3:2130729-2130806
Coord C2 exon
chr3:2130290-2130728
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
AATACCTACGTTTTTTTCAGGTC
3' ss Score
10.27
Exon sequences
Seq C1 exon
AAGGTGTCCTATAAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGCACAGGTGTCAAGGCCTGGAGGCATGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCCCAGTCAGCCCTGCCTGGCTGCAGCCTTATCCACATCGACTATTACCTTCAG
Seq A exon
GTTTGGTGTTGCCCAGGGCTGGGTGGCCTAAGGCTAGGTGGCCTTGGCCTTACTCTTCAATACCTACGTTTTTTTCAG
Seq C2 exon
GTCTCCATGAAAGCACCCGAGGCCACCGTGACTCTCCCACTATTTGTTGGCAATATTGCTGTGAACCAAACTCCACTGAGCCCCTGTCCAGGCCCAGGGTCTTCTCCTGGGCTGCTGTCCCCAGTGGTGCCCTCTGCACCTCCTCAGGAAGAGGCTGAGGCAGTGGCTAGTGGCCCTCACTTCTCAGACCCTGTCTCACTCTCCACCAAGAGCCATTCTCAGCAGCAGCCACTGTCTACTACATTGGGTTCTGTGTCTGTCACCACCATTGAGCCGTGTGTTCAGGTTGGAAGTCCTGCTAGACATTCTCTGCACCCTCCCTTGTGCATCTCTATAGGTGCCACTGTCCCCTACTTTGCAGAAGGCTCTGGGGGCCCAGTACCTACCACCAGCGCCTTGATCCTTCCTCCAGAGTACAGTTCATGGGGCTACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622:ENSRNOT00000010169:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.456
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=FE(46.4=100)
A:
NA
C2:
PF0275217=Arrestin_C=PD(16.0=13.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGATCTATGATGTGCGG
R:
CTCGGGTGCTTTCATGGAGAC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]