MmuALTA0015372-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000044628 | Rnf208
Description
ring finger protein 208 [Source:MGI Symbol;Acc:MGI:1916096]
Coordinates
chr2:25098458-25098820:+
Coord C1 exon
chr2:25098458-25098531
Coord A exon
chr2:25098692-25098719
Coord C2 exon
chr2:25098720-25098820
Length
28 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCACCGGCTGCCCCTTGCAGTCC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGGACTGCTGACCTCTGCTACAGGAGGAGGCCCCTCCACGCCCCCTTGCCAGCTTCAGCAGACAGAGACCCTGG
Seq A exon
TCCACAGAGTAACCGTGGTCCTCACCAG
Seq C2 exon
GCCTGGCAGGACCAGGATGCAGCCCCTTCTCTTCCCCCACGGCCCCACCCAACACCCCCACCTGTGCCAACGTCCAGTCTGACTGTAGAGAGCCGGATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044628-1-5,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF136391=zf-RING_2=WD(100=18.8),PF0136316=FYVE=WD(100=22.6),PF051919=ADK_lid=WD(100=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTCAGCAGACAGAGACC
R:
CCGGCTCTCTACAGTCAGACT
Band lengths:
121-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: