MmuINT0024161 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59744973-59745806:-
Coord C1 exon
chr2:59745496-59745806
Coord A exon
chr2:59745109-59745495
Coord C2 exon
chr2:59744973-59745108
Length
387 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTCTCTGTATCTCAATGCAGAAT
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGTTGGATGTGTCCAGAGCCTGCATCGGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq A exon
GTAGGTTATTGAGATTAACTTGACAAATTATTGTGCTTCTTTGCTAATTGGAGCCTATTTTCTATTGCCTGTTATCTATGTATCTTCTTGTATGTCTGTGATCCACGTGGATCATGCTACTTGCATGGTGCTTTGTAAAAACTTTTTTTTTTTTTTGTTATGTGCATCGATAATCCTGCAAAGTGATCTTACATTTATCTGGTTGTGACTAAGCTTCAAGGCACGTAGCCAGTCTGTGCACTACATCAGATTTAGTTGCTTAAACTTTATACTTATTGGCTGTTACGTGTTTTTGTCATTGCTTGGCTTTCAGTGTGATGATTGTTTCACATTCAGTGACCATAAATGTGGCCGTGACCTACTCAATTTCTCTGTATCTCAATGCAG
Seq C2 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGGAAAGGGAGGACTTG
R:
TTCTGCTAAGGCCCTTCTCCA
Band lengths:
345-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: