GgaINT0050427 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38195832-38196660:-
Coord C1 exon
chr7:38196350-38196660
Coord A exon
chr7:38195968-38196349
Coord C2 exon
chr7:38195832-38195967
Length
382 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTCTCTATATTTCACTGCAGAAC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTGGCTGTGTCCTGAACCTGCATCAGAAAGAGAAGACTTGGTATATCATGAACATAAGTCAATTATTAGATTGCACAAGAAATACGATGGAGATAGTGCTGGAGGCGGAGAAGGCAGTACCAGCTCTCTAGAGCGGAAGAATGACAACCCTCTAGATATAGCTGTAACCAGACTTGCTGACTTGGAGCGGAACATAGAGCGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq A exon
GTAGGTTTTTGAGATTAACTTGAAAAATTATTGTGCTTCTTTGCTAATTGGAGCCTATTTTCTATTGCTTGTTATCTATGTACTTTCTTGTATGTCTGTGATCCATATGGATCATGTTATTCTGCATGGTGCTTCATAAAGATATTTTTTGTTATGTTCGTTGATAATGCAAAGTTATCTTACATTTAACTGGATGTGACTAAGCTTTGAGGCTTGTAGCCACAGTCTGTGCACTACATCAAATTTAGTTGCTTATACCTTATACTTATTGGCTGTGTACGTTTTGTCATTGCTTGGCTTTCAGTGTGATAATGCTTGTTTCACATTCAAATATCAGCAAACACGGATGCGACCTACCTAATTTCTCTATATTTCACTGCAG
Seq C2 exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTCCTGAACCTGCATC
R:
TTCTCCATACCCTCAGCCCTG
Band lengths:
347-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]