BtaINT0025106 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37132798-37133630:+
Coord C1 exon
chr2:37132798-37133108
Coord A exon
chr2:37133109-37133494
Coord C2 exon
chr2:37133495-37133630
Length
386 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTTTCTATATTTCAATGCAGAAT
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGTTGGATGTGTCCAGAACCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCATTTTCTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGAAGAAGGCAGTGCACATGCACTGGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCGTTAGTGGTGATGGTGACGG
Seq A exon
GTAGGTTATTGAGATTAACTTGAAAAATTATTGTGCTTCTTTGCTAATTGGAGCCTATTTTCTATTGCCTGTTATCTATGTATCTTCTTGTATGTCTGTGATCCATATGGATCATGCTACTTGCATGGTGCTTCGTAAAAACATTTTTTTTTTGTTATGTGCGTTGATAATCCTGCAAAGTGATCTTACATTTACCTGGTTGTGACTAAGCTTTGAGGCACGTAGCCACAGTCTGTGCACTACATCAAATTTAGTTGCTTAAACCTTATACTTATTGGCTGTTACATGTTTTTGTCATTGCTTGGCTTTCAGTGTGATGATTGTTTCACATTCAGTAACCATAAATGTGGACATGACCTACTTAATTTTTCTATATTTCAATGCAG
Seq C2 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCATCAGAAAGGGAGGA
R:
TGCGAGCTTCTGATAATGCCC
Band lengths:
356-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]