HsaINT0016843 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160193453-160194283:-
Coord C1 exon
chr2:160194078-160194283
Coord A exon
chr2:160193589-160194077
Coord C2 exon
chr2:160193453-160193588
Length
489 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTTCTATATTTCAATGCAGAAT
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGTTGGATGTGTCCAGAGCCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAATCATTTACTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGACGAAAGCAGTGCACATGCACTAGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAG
Seq A exon
GTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCGTTAGTGGTGATGGTGACGGGTAGGTTATTGAGATTAACTTGAAAAATTATTGTGCTTCTTTGCTAATTGGAGCCTATTTTCTATTGCCTGTTATCTATGTATCTTCTTGTATGTCTGTGATCCATACGGATCATGCTATTTGCATGGTGCTTTGTAAAAACTTTTTTTTTGTTATGTGCGTTGATAATCCTGCAAAGTGATCTTACATCTACCTGGTTGTGACTAAGCTTTGAGGCACGTAGCCACAGTCTGTGCACTACATCAAATTTAGTTGCTTAAACCTTATACTTATTGGCTGTTACATGTTTTTGTCATTGCTTGGCTTTCAGTGTGATGATTGTTTCACATTCCGTAATCGTAAGTGTGGACATGACCTACTTAATTTTTCTATATTTCAATGCAG
Seq C2 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAATTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGTCCAGAGCCTGCATC
R:
ACTTTCATAATTGATTTTTCCCATGC
Band lengths:
336-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)