DreINT0036883 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11756193-11759372:+
Coord C1 exon
chr6:11756193-11756494
Coord A exon
chr6:11756495-11759239
Coord C2 exon
chr6:11759240-11759372
Length
2745 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TGTGTTTTTGTGTGTTCCAGGGG
3' ss Score
11.73
Exon sequences
Seq C1 exon
GGCTGGACATACCCAGAGCCGCAGTCTGAGAGAGAGGACCTTGTCTATTTCGAGCACAAGCCCCTCCCCAAGCACCGCCCTGGGGCGGAGTCTCAGGAGGAGCGCAGCTCGGAGAAGGGTCTGATCCGGCGCCCCAGCAACCCGCTGGACATCGCTGTGATGCGGCTGGCAGAGCTGGAGCGCCACATCGAGAGAAGGTACCTGCGGAGCCCCTTAGGGACCACCATCCAGATCAAACTGGATAATGTGGGTACAGTCACTGTCCCCGCACCTGCTCCATCCACTAGCGCTGGAGGGGAAGG
Seq A exon
GTAGGTCATCCAGAATTGCCAGCCTTCGTTTCGGCTCCTCCTCATCCTCCCCCTCCCCCTCTCTCTGCTGGCTGGGGCTTCTCTGCTCGTCCGTCCATCCGTTCTCACCCTGGCTCCAGTTTCGGGTTTTGGTTCTTGTGCTGTGTCTCTTGTTTTTTTTGTTTTTTTTTCTTTTTGTTGTTGTCGTTTTGTTTTCCTCTCGCTCCCTTTGCCTGCACCCTTCCTGTTTTTGGCTGCATGGTTTTAATCAGCAGTCCACAGACGGACTTTGAAAAAAACACTGAAACTCGATTTGGTTTTTAATACTTCTAAGTGCATGGTCCACCACTGCGTCCAGTGCTCTCCGTCTTCATGTATGGCTGTGAAGTCAAGCCACATAATTATAACACACCGTATTTGCTTTTTTTGTTCATGTCTATGTGTGTGTGTGTGTGTTTATGTGTGTGTGCTTTTGAAAACTCAGGGTCTTACCTGCTCAATTTGAAGGGTGTGTCTCAAATGAAAGGCTGCATCCTAGTGAGGCACCTACCGCAGACTATGAGCTCTGATTTATTTATTTATTTTTACACACCATATATGCCACATTTTCCACATTTCTGGTATTTAGAGCTTATAGACTATTTCAACGTGGTCATGTCATTGGCCCATAAACATTTCCTGCTTGTTGCCAAACTATTTCATAACTGTAATAAGAGGTTATTCAATCATATCTTAATGTTGAAACAACTTCCATAACATTATTTATCAATAAGAGGACCTTTTTGGATTCCTGGGAGCTATGGAAATTAAAAATGTAATGCAGGAAATACATTCAGACCAATCCCTCAAAATGGTCTATATAACTGCTTCTACATTTAAAGAGATAGTTCATTCAAAAATGAACATTTACTTGCTGTTTAATCAACCTCAAGTTTTTATGAGGTCTTTGTTCTGTTAAACACAAAATAAGATATTTTGAAAACCTGTAACCATTGACTTCCATTGTAGGACAAATAAATACAACTGTATGGACGTCAATGGTTACAGGTTTCCAGCTTAATTCAAAATACCTTATTTTGTGTTTAATAGAAGAAGAAAAAAAGAGTGAGTAAATGATGACAGAATTTTCTTGTTTTTAGGTGTACTATCCCTTTAAACTACATCTACACATAGGGCTACACTAAGAGTGGTGTTAACACTTATATCTTAACAAATATTGAAGAATCAACCTCTTTTTTTTGAATTGCATAGATATTATTATTATTATTATTAATACTATTCTAAAAACATTGGAAGTGTCAAAGTTTGTGACCTCCACTCTTTTAGCTTACACTTAGCTTTGTGTTTGTCCAGCAATTATTTTATTTTTATTATTATCAGTTTTGAACAAAAAAAAAGATGGTAAACTGTGCAAACACTAAACTTTTTGCTGGTGGACACAGGACATTTTCCATTAACAGTTTTAGTTAATAGAATCACTAAAAAACTAAATACAGTAAAACTTTAGTTTAAAAAAACAATTAAAACCATTTACTACTGCCTTATTACCTGCCTATAATTAAGATGTTAACTTTTTATTAGCACTTATAAATGATCTTATTTTATATCTTTAATTTTACCCAATACCCAAACCCAACTACTATTTTACACTAACTAAAATCAAGCAGCTAATTATTAGTTTATTGAGGTAAAAGTCTTAGTTAATGAGTTTCTTTCTTCTGTTGAACAGAAAAGAAGATGTTTTGAAGAATGCTGGCACCCCCAAAAATAACTGTGAAAGTCAATGGGTGCCAGCTACTTAGCATTACTTTGCCAGATACTTAGTTGTTTTAGCTTAAAGTCTTAGTTAATGAGTTTCTTTTTTCTGTTGAACACAAAAGAAGATATTTTGAAGAACGCTGGCACCCCCCCCCCCCCCCCCCACCAAAAAAAAAGTACAGTAAAAGTCAATAGGTGCTAGCTATATTTTGAGATAAGAAAGATTAGAGCTTCTTGATAAAAACATTATTGAAATCCAGTGTAGCTTTCACTACATCATTCTACACAATAAAATAATAAGATAATACATATAAATTTAAAAATATGAAAATATGTTTGGTTTATTCATAGCTCTGCCTAAATCAGTTGGCTCTGGTGTGGTGGAGCATTGATATTACAGTACTAAATAGTTATTTTAGCATCATCAATAACATCATAAGCAATCATTTCATGTGTTTAAGAGATGATTTATTTGGTCATTTAATCAGAATGTATGTAAAGGATTGTGGGTAAATACACTTCAAAATAAGCTAAATGAGGAGGATGCCTCATGGTTTGAAGGATCCTTCAAATTGAGACCTCATTTTGATGTAGAAGCCCTAGATATACAGCCTTACTAGGAAACAGCCTTCCGCTTGAGATGCACCCTGACACTAAAGGGTTAGTTCACCCAAAAATGAAAAATACCTCATTATTTACTTTTCCTCTTGTGTTTTTAAACAGTTTCTTTCTTCTGTTGAACACAAAAGCAGATATTTTGAAGAATGCTTGCAGCTGGCACTATGGATGTGCAAAATTACTTTGGATGTTACCAGCTACCAGCATTTTTCAAAATATCTTGATTATTATTAATAATAATATAATTATTTATTATTATTATTATTTTTTATCTTCTTTGAGGGTTTTTTATTTTTTTTATTTTTGAGTGAACTATCTCTTTAAGAATAAATTACAGCTTAGTGATAAAGTTCCTCACTGACCTGTGCTGTGTGTTTTTGTGTGTTCCAG
Seq C2 exon
GGGAGAGGAAGAGATTGCTCCAGGAATGAAGCTCTGGCGGAAAGCTTTGAGTGAGGTGCGCAGCTCCTCTCAGCTGGCCATGTGTCTGCAGCAGCTGCAGAAGTCCATCGCCTGGGAAAAGTCTATCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]