RnoINT0024836 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45976791-45977629:-
Coord C1 exon
chr3:45977319-45977629
Coord A exon
chr3:45976927-45977318
Coord C2 exon
chr3:45976791-45976926
Length
392 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTCTCTATATCTCAATGCAGAGT
3' ss Score
6.63
Exon sequences
Seq C1 exon
GGTTGGATGTGTCCAGAGCCTGCGTCAGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCATTTACTAAGTTGTCCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCTCATGCACTGGCACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq A exon
GTAGGTTATTGAGATTAACTTGACAAATTATTGTGCTTCTTTGCTAATTGGAGCCTATTTTCTATTGCCTGTTATCTATGTATCTTCTTGTATGTCTGTGATCCGCGTGGATCATGCTATTTGCATGGTGCTTTGTAAACCTTTTTTTTTTTTTTTTTTTTGTTATGTGCATTGATAATCCTGCAAAGTGATCTTCCATTTATCTGGTTGTGACTAAGCTTCAAGGCACGTAGCCAGTCTGTGCACTACATCAGATTTAGTTGCTTAAACTTTATACTTATTGGCTGTTACATGTTTTTGTCATCGCTTGGCTTTCAGTGTGATGATTGTTTCACATTCAGTGACCATAAATGTGGCTGTGACCTACTCAATTTCTCTATATCTCAATGCAG
Seq C2 exon
AGTTGAAGAGGACATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCGTTAGCAGAGGCTCGCAGTGCTGCACAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAGAAAGGGAGGACTTG
R:
CTGCTAACGCCCTTCTCCAGA
Band lengths:
343-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]