RnoEX0014196 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45972929-45981718:-
Coord C1 exon
chr3:45981558-45981718
Coord A exon
chr3:45976791-45976926
Coord C2 exon
chr3:45972929-45973075
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTCTCTATATCTCAATGCAGAGT
3' ss Score
6.63
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
TTGCTATTATTGAATTAAATGAGAATGAAGAAAATCAGGTAACGCGCGATTTAGTGGAGAACTGGTCGGTAGAAGAGCAGGCGATGGAGCTGGACCTGAGCATTCTCCAGCAAGTGGAGGACCTGGAACGCAGGGTTGCATCCGCAAGCTTGCAAGTGAAG
Seq A exon
AGTTGAAGAGGACATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCGTTAGCAGAGGCTCGCAGTGCTGCACAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Seq C2 exon
TACTGCCAGATCTGTCGAAAGGGAGACAATGAGGAACTGCTGCTACTCTGTGACGGCTGTGACAAAGGCTGCCATACCTACTGCCACAGGCCCAAGATTACAACTATTCCTGACGGGGACTGGTTTTGTCCAGCTTGCATCGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062824=PHD=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCGATTTAGTGGAGAACT
R:
CCAGTCCCCGTCAGGAATAGT
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]