BtaEX0005322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37132798-37136962:+
Coord C1 exon
chr2:37132798-37133108
Coord A exon
chr2:37133495-37133630
Coord C2 exon
chr2:37136816-37136962
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTTCTATATTTCAATGCAGAAT
3' ss Score
7.78
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGTTGGATGTGTCCAGAACCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCATTTTCTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGAAGAAGGCAGTGCACATGCACTGGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCGTTAGTGGTGATGGTGACGG
Seq A exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Seq C2 exon
TACTGCCAGATATGTCGAAAGGGAGATAATGAAGAACTGCTCCTCCTTTGTGATGGCTGTGACAAAGGCTGTCATACATACTGCCACAGACCCAAGATTACAACTATACCAGATGGGGATTGGTTTTGTCCAGCTTGCATTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062824=PHD=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGAAGAGTGACAACCCC
R:
CAGCCTTTGTCACAGCCATCA
Band lengths:
250-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development