DreEX6020942 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11756193-11763771:+
Coord C1 exon
chr6:11756193-11756494
Coord A exon
chr6:11759240-11759375
Coord C2 exon
chr6:11763625-11763771
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTGTGTGTTCCAGGGG
3' ss Score
11.73
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGCTGGACATACCCAGAGCCGCAGTCTGAGAGAGAGGACCTTGTCTATTTCGAGCACAAGCCCCTCCCCAAGCACCGCCCTGGGGCGGAGTCTCAGGAGGAGCGCAGCTCGGAGAAGGGTCTGATCCGGCGCCCCAGCAACCCGCTGGACATCGCTGTGATGCGGCTGGCAGAGCTGGAGCGCCACATCGAGAGAAGGTACCTGCGGAGCCCCTTAGGGACCACCATCCAGATCAAACTGGATAATGTGGGTACAGTCACTGTCCCCGCACCTGCTCCATCCACTAGCGCTGGAGGGGAAGG
Seq A exon
GGGAGAGGAAGAGATTGCTCCAGGAATGAAGCTCTGGCGGAAAGCTTTGAGTGAGGTGCGCAGCTCCTCTCAGCTGGCCATGTGTCTGCAGCAGCTGCAGAAGTCCATCGCCTGGGAAAAGTCTATCATGAAAGTG
Seq C2 exon
TACTGTCAGATATGCCGAAAGGGTGATAATGAAGACCTGCTTCTGCTGTGTGACGGCTGTGATAAGGGCTGTCACACCTATTGCCACAAACCCAAGATAACCACCATTCCAGAGGGAGACTGGTACTGCCCCGACTGCATTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'48-44,'48-42,50-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062824=PHD=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCGGAGAAGGGTCTGATC
R:
CACACAGCAGAAGCAGGTCTT
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]