GgaEX6043398 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36058747-36060323:-
Coord C1 exon
chr7:36060013-36060323
Coord A exon
chr7:36059495-36059630
Coord C2 exon
chr7:36058747-36058893
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTCTCTATATTTCACTGCAGAAC
3' ss Score
8.7
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGCTGGCTGTGTCCTGAACCTGCATCAGAAAGAGAAGACTTGGTATATCATGAACATAAGTCAATTATTAGATTGCACAAGAAATACGATGGAGATAGTGCTGGAGGCGGAGAAGGCAGTACCAGCTCTCTAGAGCGGAAGAATGACAACCCTCTAGATATAGCTGTAACCAGACTTGCTGACTTGGAGCGGAACATAGAGCGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq A exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
Seq C2 exon
TACTGCCAAATATGTCGAAAGGGAGATAATGAGGAACTGCTGCTGCTTTGTGATGGTTGTGATAAAGGCTGTCATACCTACTGCCACAGACCCAAGATCACTACCATACCAGATGGTGACTGGTTTTGTCCTGCCTGCATAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'60-65,'60-64,62-65=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062824=PHD=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGTATCTGAAGAGCCC
R:
GCAGGACAAAACCAGTCACCA
Band lengths:
245-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]