GgaEX6043398 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38195084-38196660:-
Coord C1 exon
chr7:38196350-38196660
Coord A exon
chr7:38195832-38195967
Coord C2 exon
chr7:38195084-38195230
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTCTCTATATTTCACTGCAGAAC
3' ss Score
8.7
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGCTGGCTGTGTCCTGAACCTGCATCAGAAAGAGAAGACTTGGTATATCATGAACATAAGTCAATTATTAGATTGCACAAGAAATACGATGGAGATAGTGCTGGAGGCGGAGAAGGCAGTACCAGCTCTCTAGAGCGGAAGAATGACAACCCTCTAGATATAGCTGTAACCAGACTTGCTGACTTGGAGCGGAACATAGAGCGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq A exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
Seq C2 exon
TACTGCCAAATATGTCGAAAGGGAGATAATGAGGAACTGCTGCTGCTTTGTGATGGTTGTGATAAAGGCTGTCATACCTACTGCCACAGACCCAAGATCACTACCATACCAGATGGTGACTGGTTTTGTCCTGCCTGCATAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'45-50,'45-49,47-50=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062824=PHD=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGTATCTGAAGAGCCC
R:
GCAGGACAAAACCAGTCACCA
Band lengths:
245-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]