BtaALTD0003185-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37132879-37133630:+
Coord C1 exon
chr2:37132879-37133003
Coord A exon
chr2:37133004-37133108
Coord C2 exon
chr2:37133495-37133630
Length
105 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTTTCTATATTTCAATGCAGAAT
3' ss Score
7.78
Exon sequences
Seq C1 exon
GAGCATGATGGAGAATTTACTGGCGAAGAAGAAGGCAGTGCACATGCACTGGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAG
Seq A exon
GTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCGTTAGTGGTGATGGTGACGG
Seq C2 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-61-64,62-64-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGATGGAGAATTTACTGGCG
R:
TTTTCCCATGCTATTGATTTCTGT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development